I have uploaded (to your ftp server) a sample NEF straight from the camera file as well as the JPG that I created using PM (JPG, Quality 90%, Preserve EXIF, No Scaling, Convert to sRGB, no other options selected). In addition, I have uploaded the same image, but now with my base IPTC applied (the IPTC I normally apply when I ingest), again both the nef and the PM saved JPG.
Note, I shot the image without lens so this time the bad format is in entry 3. With a lens attached the bad entry is number 4 (see uploaded D500_Camera_Lens sample pair).
Hope you can find the cause and fix this easily. If you need more samples, just let me know.
Cheers,
Hayo