This is when having CD and SD card slots comes in most handy! Raw to CF and jpeg to SD.
Marc,
This sort of "selective ingest" is on our radar. We do recognize how it could be useful in some scenarios. In the meantime, I find it more efficient (and faster) just getting the whole card ingested and then start using Move to start sending different files to the folder where they need to go. It gets to be a pain dealing with partially ingested memory cards. But yes, we do know there can be cases where this is useful. Thanks. :-)
-Mick