Hi Kirk,
In the interim I deleted additional metadata and reinstalled PM. I was able to reproduce the issue with the following sequence:
1. starting with new install (after logging out and back in) I have just "Default Catalog" and "Search: 1, Modify: 1"
2. in Manage Catalogs create new "Test Catalog" and check its Search and Add/Modify boxes: two Active Catalogs shown and "Search: 2, Modify: 2"
3. in Manage Catalogs, delete "Test Catalog": back to just "Default Catalog" in Active Catalogs but still shows "Search: 2, Modify: 2"
4. restart PM, same state as in #3
Log data for this sequence is attached, along with another screen shot.
Thanks,
Steve