I know I'm a late-comer to this conversation, but I have found this info to be extremely helpful. I recently discovered that Capture NX2 2.3.2 was not opening my D300 jpg's and I was totally frustrated. Nikon Customer Service was totally clueless and ultimately it was a Facebook friend pointed me to this discussion. Now, when I delete the PM end-of-file preferences metadata, NX2 seems to have no problem opening my files. So, thanks for this forum.
It is stated in one of the entries above that deleting the end-of-file preferences metadata "should cause no problems." However, I have NO IDEA what "end-of-file preferences metadata" really is...and I see the CAUTION in PM that I should be working with duplicate files when deleting metadata. Anyone care to comment on that?
If this is going to continue to be a problem, I would like a way to ingest files without the offending PM metadata. I have used PM for a long time now, but am wondering if I should be considering the switch to Nikon View NX2. The best thing in the world would be for PM and NX2 to work as seamlessly as they have in the past.